Swimming in crystal clear water, eating delicious seafood, fishing, boating, strolling the beach or simply sitting and looking out at the view: these are activities that residents in the Pensacola East Bay region of Florida cherish. More than 5 million people live along Florida’s Gulf coast and care deeply about keeping this backyard treasure healthy for their children. So does The Nature Conservancy.

Rich natural longleaf pine forests and wetland areas are important sources of clean fresh water and air. The Gulf Coast’s estuaries harbor oyster reefs, seagrass beds and marshes that provide critical habitat for marine life and sustain some of the state’s most important fisheries. Resilient coastal communities are directly tied to a healthy environment. Returning these areas to their natural conditions will benefit us all.
The work of The Nature Conservancy (TNC) and our partners makes a strong case for the value and viability of conserving and protecting the Pensacola and Perdido watershed through a variety of projects. We have the opportunity of a lifetime to work together and create a legacy of prosperity for our children, grandchildren, residents and visitors. We can work together now to secure our future tomorrow. Conserving our natural resources through targeted conservation, management and restoration will accomplish these results.

Explore the Region
TNC leads and supports a number of important conservation and restoration projects in the Greater Pensacola area of the Florida Panhandle. These range from oyster habitat restoration and fisheries management to large scale estuary programs. Click through this map to learn more about TNC’s and our partner’s work in the region.
Pensacola East Bay Oyster Habitat Restoration
The greater Pensacola Bay system provides important resources for people and nature. Water quality degradation, among other factors, has led to a sharp decline in oysters, seagrasses and related fisheries that once flourished in these bays. This project will help restore healthy, functioning oyster reefs back to the system by constructing 33 oyster reefs along 6.5 miles of shoreline in East and Blackwater Bays, the largest oyster restoration project TNC has undertaken in Florida.
Santa Rosa County Oyster Habitat Restoration Project
Part of a long-term goal to restore oyster habitat in this area, this project will initiate oyster reef mapping and create a pilot oyster shell recycling program in Santa Rosa County. Community-based outreach and communications will help raise awareness about the ecological, economic and social benefits of the Gulf's oyster and estuarine habitats and species.
Oyster Ecosystem-Based Fisheries Management Plan
This plan for the Pensacola Bay System will integrate the needs of the oyster fisheries (wild harvest and aquaculture) with the need to deliver ecosystem services and benefits provided by natural oyster habitat. The plan can serve as a model framework for transformation of the state’s management of oysters in Florida.
Perdido Blueway Trail and Watershed Protection
Crossing two states, Alabama and Florida, this project is designed to develop a bluewater trail on the Perdido River and Bay, acquire land to protect water quality and provide habitat for wildlife, and educate the public about the value of watersheds.
Pensacola and Perdido Bays Estuary Program
As a non-regulatory program, the new Estuary Program is identifying science-based goals and objectives for restoring and conserving the watersheds’ environment and economy through collaboration among government agencies and the public. Planning for this initiative dates back over 20 years ago with the formation of the Bay Area Resource Council, focused on environmental education and improving the water quality in Pensacola and Perdido Bays.
Rattlesnake Bluff Road
Restoration and improvement of Rattlesnake Bluff Road, a lengthy unpaved road, will reduce sedimentation entering the Yellow River. The river drains into Blackwater Bay, which is part of our Pensacola East Bay Oyster Habitat Restoration project site. This road contributes a substantial amount of sediment pollution to the river and bay, substantially degrading habitats for state and federally protected species in the area such as the Gulf Sturgeon.
Milton Wastewater Treatment Plant Relocation
The treatment plant currently discharges directly into the Blackwater River, upstream of our Pensacola East Bay Oyster Habitat Restoration project. Relocation of the plant out of a high hazard area, will remove discharge from the river, facilitate connection to over 5,000 septic tanks in the area, and help improve the water quality of the bay system.
Milton Wetland Stormwater Program
This project is designed to implement a “nature-based” stormwater improvement program for the City of Milton that will create several stormwater wetlands around the city. The project will result in increased property values, improved water quality, additional recreational opportunities for the community, and additional habitat for wildlife.
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Learn More about our Work in the Pensacola East Bay Region
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Oyster Management and Restoration
Oyster reefs are important to our estuaries and our health. They provide important ecosystem services – filter and clean the water, provide nursery habitat for fish, shrimp, crabs and birds, and help to reduce shoreline erosion. For such a small animal with no backbone, oysters provide powerful services!
Pensacola East Bay Oyster Habitat Restoration
Led by The Nature Conservancy
This project, funded by the National Fish and Wildlife Foundation’s Gulf Environmental Benefit Fund, is the largest scale estuarine habitat restoration TNC Florida has undertaken. The objective is to restore oyster habitat that has been lost in the East and Blackwater Bays in Santa Rosa County. The work complements restoration completed by the state on harvested reefs adjacent to the project site and will serve as a model for large-scale oyster habitat restoration.
Phase 1, which was completed in March 2019, consisted of two years of pre-restoration monitoring, permitting, and design of 33 individual oyster reefs of varying sizes to be located along approximately 6.5 miles of shoreline in East and Blackwater Bays in Santa Rosa County. We worked in partnership with stakeholders from local, state and federal agencies to share technical information and expertise on the project design.
Phase 2 is just getting underway and includes construction of the 33 reefs that were designed during Phase 1, followed by five years of monitoring to evaluate progress and success in the newly created habitat, and measure how many oysters are thriving. Stay tuned for updates.
Santa Rosa County Oyster Habitat Restoration Project
Led by The Nature Conservancy and Santa Rosa County
Knowing where oyster habitat exists today, how much is there and how healthy it is, are key pieces of information needed to fully restore a bay’s oyster population. Yet this information hasn't been collected from many estuaries. Part of a long-term goal to conserve, restore and manage oyster habitat in the greater Pensacola Bay system includes filling this gap in East and Blackwater Bays in Santa Rosa County. The oyster mapping and condition analysis that results from this project, along with creation of a county-wide oyster shell recycling program, will support future oyster restoration projects in the area. County and TNC staff plan to engage with the community through outreach and communications about the ecological, economic and social benefits of the Gulf's oyster and estuarine habitats and species. Funding for this project is provided by Santa Rosa County and the RESTORE Act.
Oyster Ecosystem-Based Fisheries Management Plan
Led by the Nature Conservancy
Oysters are unique among Florida’s fisheries and coastal habitats. They are a species that is an important fishery and they create reefs that are some of the most important ‘fish making’ habitats in the world, supporting other commercially and recreationally important fishes. Oyster habitat is in serious decline throughout the world, including in Florida, and the once highly productive oyster fisheries are collapsing. The good news is that recovery is possible with proactive restoration and sustainable management. Through a facilitated, consensus-based stakeholder process, an oyster ecosystem-based fishery management plan is being developed for the Pensacola Bay System that integrates the needs of the oyster fisheries (both wild harvest and aquaculture) with the need to deliver ecosystem services and benefits provided by oyster habitat. The plan can serve as a model framework for transformation of the state’s management of oysters in Florida.

Pensacola and Perdido Bays Estuary Program
Led by Pensacola/Perdido Bay Area Local Governments
Communities throughout the Pensacola and Perdido estuaries united to form the first Estuary Program in Florida’s Panhandle region, funded by the Environmental Protection Agency and Deepwater Horizon oil spill settlement funds. This non-regulatory program will leverage and coordinate efforts among all stakeholders including local, state and federal government and the public, to identify science-based goals and objectives for restoring and conserving the watersheds’ environment and economy. The establishment of this program is the result of years of collaborative effort by local governments, non-government organizations, and public requests for the creation of an estuary program in Northwest Florida.
TNC played a pivotal role in conceiving the new estuary programs in the Panhandle, initiated by the Community-based Watershed Planning we organized and facilitated for every watershed in the Panhandle and the Springs Coast. TNC will continue to be an integral partner with the Estuary Program during the planning process.
The Estuary Program will guide the development of a science-based Comprehensive Conservation and Management Plan (CCMP) that will be a fully vetted roadmap for achieving publicly identified environmental and economic outcomes and goals for the Pensacola and Perdido Bay watershed.

Wastewater and Stormwater Management
Milton Wastewater Treatment Plant Relocation
Led by the City of Milton
The Milton Wastewater Treatment Plant (WWTP) is a direct discharge into the Blackwater River, which is upstream of our Pensacola East Bay Oyster Habitat Restoration Project. Relocating the plant would remove nutrient-laden discharge to the Perdido River, improving the water quality of both the river and the bays it flows into; facilitating connection to over 5,000 septic tanks from the potable well protection zone that provides water to the majority of Santa Rosa citizens; and facilitate reuse of the plant’s discharge water.
Milton Wetland Stormwater Program
Led by the City of Milton
This nature-based stormwater program will create wetland parks to clean untreated stormwater currently discharging into the Blackwater River. The parks would provide a buffer between development and the river, increase the resilience of the community; raise property values of adjacent properties; create habitat for birds and other wildlife; and improve water quality. Both the WWTP relocation project and the stormwater improvement projects are led by the City of Milton.

Perdido River
Perdido Blueway Trail and Watershed Protection
Led by The Nature Conservancy
Rivers are the lifeblood of the Gulf of Mexico and to restore the Gulf, the rivers and the watersheds that drain to them must be restored. The goal of this project is to create a bluewater trail on the Perdido River and Bay so that paddlers can experience the watershed and its diverse habitats and see for themselves how the lands and waters along the river are connected. This is a joint effort by TNC in Alabama and Florida.
In addition to the bluewater trail, land acquisition is a critical part of this project. The goal is to acquire and protect key parcels of land, floodplains and buffer areas to preserve important habitats, species, and the river’s water quality as development occurs in the Perdido watershed.
Flori-Bama Expedition on the Perdido River
Led by Paddle Florida
In March 2019 Paddle Florida hosted the Flori-Bama Expedition, a five-night, 60-mile paddle/camping trip down the Perdido River to the Gulf of Mexico that was enjoyed by 60 paddlers representing 12 states.
2020 has been named the "Year of the Gulf." A five-state – Florida to Texas - paddle event will celebrate this recognition and educate participants on the connection between the health of the watersheds that feed our rivers, and the health of the Gulf of Mexico overall.

Sediment Reduction
Rattlesnake Bluff Road and Riverbank Restoration
Led by the U.S. Department of the Interior
Throughout Florida’s panhandle, heavy rainfall causes unpaved roads to become impassable and delivers sediments from the roads into our estuaries, reducing water quality. TNC and key partners conducted studies that identified Rattlesnake Bluff Road, an unpaved road in Santa Rosa County that commonly washes out and runs parallel to the Yellow River, as a high priority for improvement and restoration. This restoration is critical to protecting the River corridor that provides important habitat for state and federally protected species and drains into Blackwater Bay, a part of our Pensacola East Bay Oyster Habitat Restoration.
The project proposes to restore approximately 15 miles of road and 25 miles of river and tributary habitats, improving the river's environment and water quality and providing a stable and reliable road for residents and visitors.