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Great Lakes

Aquatic Invasive Species Management

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A crayfish being studied and measured on a boat.

Substantial progress has been made in preventing new invasive species from entering the Great Lakes.

Now efforts are turning to detecting those that slip through and controlling the species that are already here.

Invasive Rusty Crayfish TNC Michigan fisheries team working with members of the DNR to monitor rusty crayfish, an aquatic invasive species in the Great Lakes that eat native fish eggs. © Jason Whalen/Fauna Creative

The Great Lakes are one of the most important freshwater systems on Earth—supporting wildlife, drinking water, recreation and billions of dollars in economic activity. But they are also the world's most heavily invaded freshwater ecosystem, making prevention and early action critical to protecting these waters.

The good news: science‑based solutions, such as strong prevention policies, early detection tools, and long-term management, are working. Scroll on to discover how invasive species spread, what’s being done to stop them—and how you can help.

What's on This Page

A Quick Primer

Before we take a deeper dive into invasive aquatic species in the Great Lakes, let's run through what, exactly, an invasive species is and how many there are within the region.

Click a point to get the answers! Return

How do invasive species get into the Great Lakes?

Most invasive species arrive through human activities, such as shipping, canals, accidental or intentional releases or recreational activities. Click each photo below for an example of how this happens!

A sea lamprey with its disc-shaped mouth lined with rows of sharp teeth.
A docked ship emptying its ballast water via a hole in the side.
A bright orange fish floating in front of green aquatic plants and over beige rocks.
Two people paddling on calm water near a bigger boat.

What happens when invasive species disrupt native ecosystems?

Biodiversity is the web of life that keeps ecosystems healthy—from fish and birds to plants and microorganisms. In the Great Lakes, invasive species weaken that web by crowding out native species that have evolved to work together over thousands of years. When those connections break, entire ecosystems become less resilient, affecting fisheries, wildlife and people alike.

Invasive species tend to be aggressive, reproduce quickly and have few, if any, natural predators. As a result, they can rapidly outcompete native fish, plants and wildlife for food and habitat.

Lindsay Chadderton, Program Director, Aquatic Invasive Species for TNC
A person in scuba gear and a black wet suit underwater inspecting a lake bottom.
Great Lakes Diver TNC diver, Lindsay Chadderton, inspects reef habitat in Lake Michigan. © Jason Whalen/Fauna Creative

For instance, the spread of invasive fish contributed to the decline of lake whitefish, lake trout and other fish populations important to both recreational and commercial fishing.

Shorelines aren't spared from the impact of invasive species, either. Along the lakes' shores and waterways, invasive plants, such as Eurasian watermilfoil, block panoramic lake views, crowd out native plants that birds and other wildlife depend upon and get entwined in boat motors.

Meet 4 Invasive Species in the Great Lakes

Click each species to flip the photo and learn how these invaders spread, why they’re harmful and what’s being done to manage them.

Numbers to Know

The Great Lakes are the most heavily invaded freshwater system in the world—but there is hope thanks to collaboration and science-forward work.

  • A light blue icon of a crayfish.

    ~188

    nonnative species are established in the Great Lakes.

  • A light blue icon of a mussel shell.

    64

    species are considered invasive due to harm to ecosystems, economies or human health.

  • A light blue icon of three arrows pointing down, with the middle arrow being the biggest and the other two to the right and left, are smaller.

    85%

    reduction in the introduction rate of new invasive species since 2006, thanks to region-wide collaborations.

The sun shining through the dried, tufted seedheads of phragmites.
Phragmites An aggressive and invasive wetland plant, phragmites forms dense stands that crowd out and outcompete native plants in the Great Lakes. © Danae Wolfe/TNC

Decades of collaboration are paying off in the Great Lakes. Federal, state, provincial and Tribal agencies—working alongside nonprofits like The Nature Conservancy—are using science-based solutions to stop new invasive species and reduce the impacts of those already here.

As a result, the number of new invasive species entering the Great Lakes has dropped dramatically. Today’s efforts focus on three critical actions:

  • Preventing new invasions
  • Detecting threats early
  • Managing the species that pose the greatest risk to native ecosystems
A small grey-brown fish resting on the rocky bottom of a body of water.
Invasive Round Goby The round goby (Neogobius melanostomus) was introduced into the Great Lakes from the Black Sea via freighter ballast. © Rostislav Stefanek/Shutterstock
A large ship in a lock close to a bridge, undergoing inspection.
Sault St Marie Lock Ballast water exchange and adoption of risk assessment tools have contributed to the 85% decrease in new nonnative species invasions. © Thomas Barrat/Shutterstock

Keeping Invasive Species Out

Preventing invasive species from entering the Great Lakes is the most effective—and cost-efficient—line of defense. Evidence shows it’s working: the discovery rate of newly established nonnative species declined by 85% between 2006 and 2026.

One of the biggest successes has been ballast water regulation. Ships take on ballast water for stability, but that water can carry invasive organisms across oceans. In the mid‑2000s, Canada and the United States adopted new regulations requiring ships entering the Great Lakes to flush ballast tanks with saltwater and use treatment systems that kill freshwater species before discharge.

The Nature Conservancy helped support the passage and defense of these regulations, which are now enforced through comprehensive inspections. Today, 100% of incoming ships are subject to saline testing, dramatically reducing this major pathway for the introduction of aquatic invasive species.

Pursuing More Prevention Paths

There are lots of ways invasive species can enter the Great Lakes. TNC and its partners are working to identify where prevention efforts can have the greatest impact and to close the gaps that invasive species use to gain entry. Click each photo to learn more!

Finding Invasive Species Early

While a lot of progress has been made in preventing invasive species from entering the Great Lakes, some species will inevitably slip through safeguards. Finding these species quickly, while populations are still small and localized, gives managers the best chance to eliminate or contain them before they spread. 

Across the Great Lakes region, the U.S. Fish and Wildlife Service and its state partners are leading early detection efforts through a world-leading, regional surveillance program that involves rigorous annual monitoring of multiple high-risk sites across the basin. TNC assists with this effort by developing regional planning tools and innovative detection methods, and by co-facilitating an annual interagency regional planning meeting. 

A bright green plant with fringy-leaves underwater.
Parrot Feather Native to South America, parrot feather grows fast and thick, choking out native species, which makes it one of the top invasive species on the early detection watch list for the Great Lakes. © Geek2Nurse / Flickr Creative Commons
 Dark clusters of mussels attached to vertical wood poles.
Zebra mussels Early detection can help stop additional populations of harmful invasve species, like zebra mussels, from entering the lakes and establishing new growth. © Third Wave Photo Wikimedia Commons
Invasive Species Risk A 2020 study led by TNC researchers determined the potential risk of nonnative species introduction at more than 30 sites across the the Great Lakes region. © The Nature Conservancy

Targeting High Risk Entry Points

Spanning more than 295,000 square miles, the Great Lakes basin is big, and it's just not possible to monitor every shoreline and tributary for invasive species. Instead, early detection efforts focus on where invasive species are most likely to arrive.

Working with federal and state agencies and other nonprofit partners, TNC is helping to identify high-risk locations by mapping major invasive pathways (such as shipping routes, canals and recreational boating) and then layering those risks across the basin. 

A silhouette of two people standing hip-deep in calm lake waters at sunset, as they place a net in the water.
Surveying Fish Species Setting fish traps in the lakes helps TNC researchers and our partners sample how many species of fish, native and invasive, are in identified areas of the Great Lakes. © Ariana Lindquist

Driven by Science

Research in Action

TNC-led science is helping detect invasive species earlier in the Great Lakes. A 2020 study (PDF) identified just over 30 high-risk entry sites, while additional research improved monitoring for invasive aquatic plants (PDF) at vulnerable locations. 

Together, this work is guiding targeted, cost-effective early detection across the region, helping partners and agencies act before invasive species spread. 

Many of the highest-risk sites are concentrated in western Lake Erie, southern Lake Michigan and the St. Clair-Detroit River System. By concentrating monitoring efforts in these areas, agencies can detect potential new invasive species more quickly and cost-effectively.

TNC and partners continue refining these tools, expanding them to inland waters and the Canadian side of the Great Lakes. The result is smarter monitoring that focuses effort where it can have the biggest impact. 

A person dressed in drab green winter outerwear and blue disposable gloves pouring water into a test tube from an opaque plastic bottle.
Finding the Smallest of Traces Seasonal Technician Jacob Wojcik pours a water sample containing eDNA into a test tube for examination. © Jason Hunter

Detecting the Invisible

eDNA & Early Detection

Sometimes the earliest signs of an invasion are invisible. Environmental DNA (eDNA) enables scientists to detect invasive species by collecting tiny traces of genetic material left behind by plants and animals in water.

Acting like an early‑warning system, eDNA can help managers identify invasive species long before they're spotted or captured, when their populations are still small and easier to manage. eDNA can also reveal an entire aquatic community from a single water sample, making it a powerful and cost‑effective surveillance tool.

TNC played a key role in testing and advancing eDNA in the Great Lakes. Between 2009 and 2010, in partnership with the University of Notre Dame, TNC scientists analyzed more than 1,000 water samples from Chicago-area waterways for traces of invasive silver and bighead carp. This research showed that these two carp species were approaching Lake Michigan, prompting stronger barrier protections in nearby canals from federal and state agencies. 

Today, eDNA is widely used across the region as part of coordinated invasive species monitoring programs, helping agencies respond faster and with greater precision.

A sea lamprey swimming underwater.
Sea Lamprey & the Great Lakes Sea lampreys likely spread into the Great Lakes through the Welland Canal, which provides a shipping connection between Lake Ontario and Lake Erie. Once in Lake Erie, they swiftly spread to the remaining Great Lakes. © Shutterstock
Three sea lampreys pressed up against a tank's glass.
Jawless and Deadly The sea lamprey's jawless, disc-shaped mouth, rows of hooked teeth, and sharp tongue allow it to attach to fish so they can feed on their body fluids. © Gena Melendrez/Shutterstock

Managing the Invasive Species Already Here

When invasive species become established in the Great Lakes, prevention is no longer enough. The next critical strategy is control—reducing populations, limiting damage and, in possible, eliminating species from specific locations.

Managing established invasive species is complex, long‑term work. But past success shows it can deliver lasting ecological and economic benefits.

A silvery fish floating close to the rocky bottom of an aquarium has a dark eel-like sea lamprey stuck high on its back, just behind its gills.
Getting a Meal Native Great Lakes fish that survive a sea lamprey attack spend more energy on healing than reproducing, causing their populations to decline. © A. Miehls/GLFC

Proven Success

Controlling Sea Lampreys

The long‑term suppression of sea lampreys (Petromyzon marinus) is one of the most successful invasive species management efforts in the world—and a powerful model for what’s possible in the Great Lakes.

Native to the Atlantic Ocean, sea lampreys are eel‑shaped parasites that attach to and then feed on large fish such as lake trout. Their introduction and rapid spread across the Great Lakes devastated native species, contributing directly to the collapse of regional fisheries in the mid‑20th century.

Today, sea lamprey populations in the Great Lakes have been reduced by about 90%, thanks to a coordinated U.S.-Canadian program overseen by the Great Lakes Fishery Commission. 

The integrated management program uses four suppression methods that were tested and proven to work in controlling sea lamprey:

  • Lampricides, which are pesticides that kill sea lamprey larvae but do not harm most other organisms when deployed appropriately

  • Traps to catch sea lampreys as they migrate to and from the streams where they spawn

  • Barriers to block sea lamprey migration to spawning areas and prevent adult lamprey from accessing spawning habitats

  • Pheromones and alarm cues, which take advantage of the natural odors that sea lampreys produce to lure migrating adults into traps or repel them from spawning habitats

Determining How to Control Invasive Species

Building on the success of the science‑based sea lamprey program and the Great Lakes Phragmites Collaborative, TNC and its partners are expanding efforts to address other long‑established invasive species across the Great Lakes.

A critical first step is deciding which species to tackle first. Working with the Great Lakes Panel on Aquatic Nuisance Species, TNC and regional partners are developing an objective, science‑driven process to identify the most high‑impact invasive species to prioritize for control, research and funding. 

Finding new tools and methods to control each invasive species effectively—without unintentionally harming native species—is crucial. Many existing tools are not species‑specific, which limits their use to small or highly controlled sites. In contrast, successful control programs, like sea lamprey management, target species-specific weaknesses rooted in biology or behavior. 

Three small mussels, pale with dark stripes on their shells, sitting on dark green moss.
Zebra Mussels One of the most well-known invasive species, zebra mussels not only harm native mussels and other aquatic species, but significantly impact human activities, too. © Deborah Kornblut/USFWS

Lessons Learned

Why Species Biology Matters

Every species, whether native or invasive, has its own biology and behavior. Understanding how a species feeds, reproduces, or moves allows managers to design targeted control methods that avoid or reduce harm to native plants and animals and are more effective over the long term. 

For example, TNC is a member of the Invasive Mussel Collaborative, which is advancing research on control options for quagga and zebra mussels. These efforts build on early trials of a species‑selective mussel toxin from a naturally occurring soil bacteria. Research like this offers exciting potential pathways to suppress invasive mussels while minimizing impacts on native species. 

For instance, to prevent invasive grass carp from entering Lake Erie, the Ohio Department of Natural Resources is targeting them during their spawning events, which appear to depend on a few large rivers and summer flood events. By focusing control efforts during these migrations, the ODNR can more effectively find and target grass carp while minimizing effects on native species.

To support strategic efforts like these, TNC is working with research and management partners to develop potential suppression tools for high‑priority invasive species. Bringing together scientists and invasive species managers to evaluate species biology, available techniques and emerging innovations will help pinpoint the most promising solutions for each species for the Great Lakes and beyond. 

Invasive Species on the Watchlist

There are several invasive species considered highly harmful—or potentially harmful—within the Great Lakes ecosystem. Click each photo for a closer look at few examples.

A large silver fish leaping from the water next to a boat full of people.
A dense mat of bright green leaves.
A colony of slightly open, brown mussels.
A tangle of dark green plants underwater.
Two fish swimming in blue-green water.

Calm lake waters reflect the early morning blue and pink-yellow clouds from the sky above.
Sunrise over Lake Erie Immense strides have already been made in controlling invasive species through collaborations across the Great Lakes, creating a solid foundation for a bright future. © David Sucsy

The future of the Great Lakes may be challenging, but it's building on a foundation of progress, partnership and possibility.

Over the past two decades, collaboration across federal, state, provincial and Tribal agencies—alongside organizations such as The Nature Conservancy—has transformed how the region responds to aquatic invasive species. Together, these partnerships have delivered real results:

  • An 85% decline in new invasive species entering the Great Lakes, driven in part by stronger ballast water safeguards and smarter risk assessments
  • The growing use of environmental DNA (eDNA) to detect threats earlier than ever before
  • A coordinated, region‑wide surveillance system that focuses on high-risk entry points and identifies potentially new and harmful invasive species

These successes show what’s possible when people, science and policy come together. But the work is far from over.

With continued investment, innovation and collaboration, we can build on this momentum—protecting native wildlife, supporting fisheries and recreation, and ensuring the Great Lakes remain a vital resource for generations to come.

How You Can Help

You can help stop invasive species and help protect the Great Lakes today. Click below for quick ways to get involved wherever you are.

6 Ways You Can Stop Invasives

Explore simple, practical steps you can take right now in your yard or neighborhood.

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